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    Ccdc148 coiled-coil domain containing 148 [ Mus musculus (house mouse) ]

    Gene ID: 227933, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Ccdc148provided by MGI
    Official Full Name
    coiled-coil domain containing 148provided by MGI
    Primary source
    MGI:MGI:3039583
    See related
    Ensembl:ENSMUSG00000036641 AllianceGenome:MGI:3039583
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm38473; 5830402J09
    Summary
    Is expressed in cranial ganglion; dorsal root ganglion; neural retina; and pons mantle layer. Orthologous to human CCDC148 (coiled-coil domain containing 148). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human all
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    Genomic context

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    Location:
    2; 2 C1.1
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (58701637..58991167, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (58821697..59160828, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_04543 Neighboring gene VISTA enhancer mm1599 Neighboring gene activin A receptor, type 1 Neighboring gene STARR-seq mESC enhancer starr_04549 Neighboring gene STARR-seq mESC enhancer starr_04550 Neighboring gene STARR-seq mESC enhancer starr_04553 Neighboring gene uridine phosphorylase 2 Neighboring gene STARR-seq mESC enhancer starr_04555 Neighboring gene STARR-seq mESC enhancer starr_04557 Neighboring gene ribosomal protein S2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_04559 Neighboring gene STARR-seq mESC enhancer starr_04561 Neighboring gene STARR-positive B cell enhancer mm9_chr2:58998596-58998897 Neighboring gene predicted gene, 54155 Neighboring gene STARR-seq mESC enhancer starr_04563 Neighboring gene plakophilin 4 Neighboring gene STARR-seq mESC enhancer starr_04569 Neighboring gene RIKEN cDNA 5330411J11 gene Neighboring gene STARR-seq mESC enhancer starr_04570 Neighboring gene STARR-seq mESC enhancer starr_04571 Neighboring gene STARR-seq mESC enhancer starr_04573 Neighboring gene predicted gene 13551

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Haplotype association mapping of acute lung injury in mice implicates activin a receptor, type 1. Leikauf GD, et al. Am J Respir Crit Care Med, 2011 Jun 1. PMID 21297076, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Ccdc148 is associated with acute lung injury
      Title: Haplotype association mapping of acute lung injury in mice implicates activin a receptor, type 1.
    Submit: New GeneRIF Correction

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 148

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001178.2 → NP_001001178.1  coiled-coil domain-containing protein 148 isoform 2

      See identical proteins and their annotated locations for NP_001001178.1

      Status: VALIDATED

      Source sequence(s)
      BC062650, BY277763
      Consensus CDS
      CCDS50587.1
      UniProtKB/Swiss-Prot
      A2APN1, Q6P5U8, Q8CDB5
      Related
      ENSMUSP00000076871.6, ENSMUST00000077687.6
      Conserved Domains (1) summary
      pfam17380
      Location:288 → 410
      DUF5401; Family of unknown function (DUF5401)

    2. NM_001362393.1 → NP_001349322.1  coiled-coil domain-containing protein 148 isoform 1

      Status: VALIDATED

      Source sequence(s)
      BC062650, BY277763

    3. NM_001362394.1 → NP_001349323.1  coiled-coil domain-containing protein 148 isoform 3

      Status: VALIDATED

      Source sequence(s)
      BC062650, BY277763, CU210857

    4. NM_001372501.1 → NP_001359430.1  coiled-coil domain-containing protein 148 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AL844163, AL929070, BX649232, CR626863, CU210857
      Consensus CDS
      CCDS89489.1
      UniProtKB/TrEMBL
      A0A2I3BPW3
      Related
      ENSMUSP00000153944.2, ENSMUST00000226455.2
      Conserved Domains (1) summary
      pfam17380
      Location:360 → 482
      DUF5401; Family of unknown function (DUF5401)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      58701637..58991167 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030250138.2 → XP_030105998.1  coiled-coil domain-containing protein 148 isoform X4

      Conserved Domains (1) summary
      pfam17380
      Location:141 → 263
      DUF5401; Family of unknown function (DUF5401)

    2. XM_017317511.3 → XP_017173000.1  coiled-coil domain-containing protein 148 isoform X5

      Conserved Domains (1) summary
      pfam17380
      Location:68 → 187
      DUF5401; Family of unknown function (DUF5401)

    3. XM_017317507.3 → XP_017172996.1  coiled-coil domain-containing protein 148 isoform X1

      UniProtKB/Swiss-Prot
      A2APN1, Q6P5U8, Q8CDB5
      Conserved Domains (1) summary
      pfam17380
      Location:288 → 410
      DUF5401; Family of unknown function (DUF5401)

    4. XM_036160980.1 → XP_036016873.1  coiled-coil domain-containing protein 148 isoform X5

      Conserved Domains (1) summary
      pfam17380
      Location:68 → 187
      DUF5401; Family of unknown function (DUF5401)

    5. XM_017317510.3 → XP_017172999.1  coiled-coil domain-containing protein 148 isoform X2

    6. XM_036160971.1 → XP_036016864.1  coiled-coil domain-containing protein 148 isoform X3

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_177650.2: Suppressed sequence

      Description
      NM_177650.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6P5U8.1 GenPept UniProtKB/Swiss-Prot:Q6P5U8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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