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    Defa20 defensin, alpha, 20 [ Mus musculus (house mouse) ]

    Gene ID: 68009, updated on 23-Jun-2021

    Summary

    Official Symbol
    Defa20provided by MGI
    Official Full Name
    defensin, alpha, 20provided by MGI
    Primary source
    MGI:MGI:1915259
    See related
    Ensembl:ENSMUSG00000095066
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Defcr2; Defcr20; 2010016F14Rik
    Expression
    Restricted expression toward large intestine adult (RPKM 3933.3) See more
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    Genomic context

    See Defa20 in Genome Data Viewer
    Location:
    8; 8 A2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (21999274..22000253)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (21509258..21510237)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (22619728..22620709)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene zinc finger, MYM-type 5 pseudogene Neighboring gene defensin, alpha, pseudogene 17 Neighboring gene defensin, alpha, 32 Neighboring gene predicted gene, 24423

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in extracellular space IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    alpha-defensin 20
    Names
    cryptdin-4
    cryptdin4
    defensin-related cryptdin-20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_183268.4NP_899091.2  alpha-defensin 20 precursor

      See identical proteins and their annotated locations for NP_899091.2

      Status: VALIDATED

      Source sequence(s)
      AK008275
      Consensus CDS
      CCDS40273.1
      UniProtKB/Swiss-Prot
      Q45VN2
      Related
      ENSMUSP00000081055.4, ENSMUST00000084042.4
      Conserved Domains (2) summary
      pfam00323
      Location:6489
      Defensin_1; Mammalian defensin
      pfam00879
      Location:1551
      Defensin_propep; Defensin propeptide

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      21999274..22000253
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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