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    C4bp-ps1 complement component 4 binding protein, pseudogene 1 [ Mus musculus (house mouse) ]

    Gene ID: 12270, updated on 8-Feb-2024

    Summary

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    Official Symbol
    C4bp-ps1provided by MGI
    Official Full Name
    complement component 4 binding protein, pseudogene 1provided by MGI
    Primary source
    MGI:MGI:99594
    See related
    AllianceGenome:MGI:99594
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C4bpb
    Expression
    Biased expression in testis adult (RPKM 1.8), bladder adult (RPKM 0.4) and 13 other tissues See more
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    Genomic context

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    Location:
    1 E4; 1 56.89 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (130597939..130609308, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (130670202..130681571, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene zona pellucida 3 receptor Neighboring gene STARR-seq mESC enhancer starr_02199 Neighboring gene predicted gene, 23623 Neighboring gene complement component 4 binding protein Neighboring gene STARR-seq mESC enhancer starr_02200 Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 Neighboring gene STARR-positive B cell enhancer ABC_E1230 Neighboring gene STARR-seq mESC enhancer starr_02204 Neighboring gene YOD1 deubiquitinase Neighboring gene expressed sequence AA986860 Neighboring gene predicted gene 28857

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The gene coding for the beta-chain of C4b-binding protein (C4BPB) has become a pseudogene in the mouse. Rodríguez de Córdoba S, et al. Genomics, 1994 Jun. PMID 7959726
    2. The gene map of the Norway rat (Rattus norvegicus) and comparative mapping with mouse and man. Levan G, et al. Genomics, 1991 Jul. PMID 1889815
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Potential readthrough

    Included gene: Pfkfb2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028304.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC139231, BB728650

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      130597939..130609308 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_001350.2: Suppressed sequence

      Description
      NG_001350.2: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
    Nucleotide Protein Strain
    Heading Accession and Version

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