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    Tmlhe trimethyllysine hydroxylase, epsilon [ Mus musculus (house mouse) ]

    Gene ID: 192289, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Tmlheprovided by MGI
    Official Full Name
    trimethyllysine hydroxylase, epsilonprovided by MGI
    Primary source
    MGI:MGI:2180203
    See related
    AllianceGenome:MGI:2180203
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    TMLD; TMLH; Bbox2; D430017M14Rik
    Summary
    Enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen. Acts upstream of or within carnitine biosynthetic process. Located in mitochondrion. Is expressed in several structures, including brain; liver; and lung. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human TMLHE (trimethyllysine hydroxylase, epsilon). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human all
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    Genomic context

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    Location:
    chromosome: X
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X Unlocalized Scaffold NT_165789.3 (251286..469175)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X Unlocalized Scaffold NT_165789.2 (159605..334431)

    NT_165789.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115489310 Neighboring gene sprouty RTK signaling antagonist 3 Neighboring gene RAD9-HUS1-RAD1 interacting nuclear orphan 1 pseudogene Neighboring gene Zf12 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional characterization of the TMLH gene: promoter analysis, in situ hybridization, identification and mapping of alternative splicing variants. Monfregola J, et al. Gene, 2007 Jun 15. PMID 17408883
    2. Functional analysis of TMLH variants and definition of domains required for catalytic activity and mitochondrial targeting. Monfregola J, et al. J Cell Physiol, 2005 Sep. PMID 15754339
    3. Molecular and Biochemical Characterization of Rat epsilon -N-Trimethyllysine Hydroxylase, the First Enzyme of Carnitine Biosynthesis. Vaz FM, et al. J Biol Chem, 2001 Sep 7. PMID 11431483
    4. Structural basis of allotypes of ecto-nucleotide pyrophosphatase/phosphodiesterase (plasma cell membrane glycoprotein PC-1) in the mouse and rat, and analysis of allele-specific xenogeneic antibodies. Banakh I, et al. Eur J Immunogenet, 2002 Aug. PMID 12121276
    5. New roles for the de-ubiquitylating enzyme OTUD4 in an RNA-protein network and RNA granules. Das R, et al. J Cell Sci, 2019 Jun 17. PMID 31138677, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Knockout of Tmlhe in mice is not associated with autism spectrum disorder phenotypes or motor dysfunction despite low carnitine levels.
      Title: Knockout of Tmlhe in mice is not associated with autism spectrum disorder phenotypes or motor dysfunction despite low carnitine levels.
    2. TMLH expression is present at E12.5 dpc in the liver, lung and brain, and is then maintained in the postnatal brain with a specific neuronal pattern.
      Title: Functional characterization of the TMLH gene: promoter analysis, in situ hybridization, identification and mapping of alternative splicing variants.
    3. C-terminal region of TMLH contains the main determinants for its enzymatic activity including a key H389 residue
      Title: Functional analysis of TMLH variants and definition of domains required for catalytic activity and mitochondrial targeting.
    Submit: New GeneRIF Correction

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC130426

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IDA
    Inferred from Direct Assay
    more info
    		  
    enables trimethyllysine dioxygenase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables trimethyllysine dioxygenase activity ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carnitine biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within carnitine biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		  
    involved_in carnitine biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in carnitine biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in negative regulation of oxidoreductase activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in mitochondrial matrix ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		  
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    trimethyllysine dioxygenase, mitochondrial
    Names
    TML dioxygenase
    TML hydroxylase
    TML-alpha-ketoglutarate dioxygenase
    butyrobetaine (gamma), 2-oxoglutarate dioxygenase 2 (gamma-butyrobetaine hydroxylase)
    epsilon-trimethyllysine 2-oxoglutarate dioxygenase
    NP_620097.1
    XP_006535917.1
    XP_036018102.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_138758.2 → NP_620097.1  trimethyllysine dioxygenase, mitochondrial precursor

      See identical proteins and their annotated locations for NP_620097.1

      Status: VALIDATED

      Source sequence(s)
      AK052425, AK161724, CAAA01120074
      UniProtKB/Swiss-Prot
      Q3TSX6, Q3UMX1, Q91XH1, Q91ZE0
      Conserved Domains (1) summary
      TIGR02410
      Location:70 → 419
      carnitine_TMLD; trimethyllysine dioxygenase

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NT_165789.3 Reference GRCm39 C57BL/6J

      Range
      251286..469175
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006535854.5 → XP_006535917.1  trimethyllysine dioxygenase, mitochondrial isoform X2

      Conserved Domains (1) summary
      cl00184
      Location:70 → 340
      CAS_like; Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases ...

    2. XM_036162209.1 → XP_036018102.1  trimethyllysine dioxygenase, mitochondrial isoform X1

      UniProtKB/Swiss-Prot
      Q3TSX6, Q3UMX1, Q91XH1, Q91ZE0
      Conserved Domains (1) summary
      TIGR02410
      Location:70 → 419
      carnitine_TMLD; trimethyllysine dioxygenase
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q91ZE0.2 GenPept UniProtKB/Swiss-Prot:Q91ZE0

    Gene LinkOut

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