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    6820431F20Rik RIKEN cDNA 6820431F20 gene [ Mus musculus (house mouse) ]

    Gene ID: 547150, updated on 8-Feb-2024

    Summary

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    Official Symbol
    6820431F20Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 6820431F20 geneprovided by MGI
    Gene description
    cadherin 11 pseudogene
    Primary source
    MGI:MGI:3694236
    See related
    Ensembl:ENSMUSG00000121492 AllianceGenome:MGI:3694236
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in limb E14.5 (RPKM 56.4), CNS E18 (RPKM 42.7) and 27 other tissues See more
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    Genomic context

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    See 6820431F20Rik in Genome Data Viewer
    Location:
    8 A1.3; 8 10.35 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (20143848..20172994)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (20268286..20297432, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_20877 Neighboring gene ribosomal protein S7 pseudogene Neighboring gene POTE ankyrin domain family member 3A Neighboring gene STARR-seq mESC enhancer starr_20876 Neighboring gene STARR-seq mESC enhancer starr_20875 Neighboring gene STARR-seq mESC enhancer starr_20874 Neighboring gene NSFL1 (p97) cofactor (p47) pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr8:19856799-19857099 Neighboring gene predicted gene, 40468 Neighboring gene RIKEN cDNA 9530057J20 gene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    2. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    General gene information

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    Markers

    Other Names

    • cadherin 11 pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_030708.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC152164
      Related
      ENSMUST00000153748.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      20143848..20172994
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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