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    1600002D24Rik RIKEN cDNA 1600002D24 gene [ Mus musculus (house mouse) ]

    Gene ID: 69776, updated on 8-Feb-2024

    Summary

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    Official Symbol
    1600002D24Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1600002D24 geneprovided by MGI
    Primary source
    MGI:MGI:1917026
    See related
    Ensembl:ENSMUSG00000117232 AllianceGenome:MGI:1917026
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See 1600002D24Rik in Genome Data Viewer
    Location:
    16 C4; 16 56.7 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (95632323..95730277, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (95831123..95929077, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_41603 Neighboring gene STARR-seq mESC enhancer starr_41604 Neighboring gene STARR-seq mESC enhancer starr_41606 Neighboring gene predicted gene 6599 Neighboring gene predicted gene, 32130 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:96032911-96033064 Neighboring gene predicted gene, 41509 Neighboring gene STARR-positive B cell enhancer ABC_E8915 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:96091084-96091462 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:96091906-96092255 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:96121787-96122048 Neighboring gene predicted gene 15340 Neighboring gene predicted gene, 41508 Neighboring gene STARR-positive B cell enhancer ABC_E1930 Neighboring gene STARR-seq mESC enhancer starr_41608 Neighboring gene STARR-seq mESC enhancer starr_41610 Neighboring gene STARR-positive B cell enhancer mm9_chr16:96212367-96212668 Neighboring gene STARR-seq mESC enhancer starr_41611 Neighboring gene proteasome (prosome, macropain) assembly chaperone 1 Neighboring gene bromodomain and WD repeat domain containing 1 Neighboring gene STARR-seq mESC enhancer starr_41612 Neighboring gene STARR-seq mESC enhancer starr_41614

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040484.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has alternate 5' and 3' exons, compared to variant 1.
      Source sequence(s)
      AK005393
      Related
      ENSMUST00000233375.2

    2. NR_040485.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) is the longer transcript.
      Source sequence(s)
      AC125079, AK037512
      Related
      ENSMUST00000232930.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      95632323..95730277 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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