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    Cdo1 cysteine dioxygenase 1, cytosolic [ Mus musculus (house mouse) ]

    Gene ID: 12583, updated on 5-Mar-2024

    Summary

    Official Symbol
    Cdo1provided by MGI
    Official Full Name
    cysteine dioxygenase 1, cytosolicprovided by MGI
    Primary source
    MGI:MGI:105925
    See related
    Ensembl:ENSMUSG00000033022 AllianceGenome:MGI:105925
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cdo; D18Ucla3; 1300002L19Rik
    Summary
    Predicted to enable cysteine dioxygenase activity and ferrous iron binding activity. Predicted to be involved in several processes, including L-cysteine catabolic process; lactation; and response to glucagon. Predicted to act upstream of or within L-cysteine catabolic process to taurine. Located in cytosol. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Orthologous to human CDO1 (cysteine dioxygenase type 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in liver adult (RPKM 643.5), subcutaneous fat pad adult (RPKM 274.9) and 6 other tissues See more
    Orthologs
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    Genomic context

    See Cdo1 in Genome Data Viewer
    Location:
    18 C; 18 24.75 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (46846260..46861569, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (46713193..46728502, complement)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene predicted gene 3734 Neighboring gene STARR-seq mESC enhancer starr_44514 Neighboring gene STARR-seq mESC enhancer starr_44516 Neighboring gene predicted gene, 54021 Neighboring gene STARR-positive B cell enhancer mm9_chr18:46901062-46901363 Neighboring gene autophagy related 12 Neighboring gene adaptor-related protein complex 3, sigma 1 subunit

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2)  1 citation
    • Endonuclease-mediated (2) 

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables cysteine dioxygenase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables cysteine dioxygenase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables cysteine dioxygenase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables cysteine dioxygenase activity TAS
    Traceable Author Statement
    more info
    PubMed 
    enables dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables ferrous iron binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables ferrous iron binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables ferrous iron binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables nickel cation binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
    Inferred from Electronic Annotation
    more info
     
    enables zinc ion binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables zinc ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in L-cysteine catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in L-cysteine catabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within L-cysteine catabolic process to taurine TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in lactation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to amino acid ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to cAMP ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to ethanol ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to glucagon ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to glucocorticoid ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to organonitrogen compound ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within taurine metabolic process TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane TAS
    Traceable Author Statement
    more info
     

    General protein information

    Preferred Names
    cysteine dioxygenase type 1
    Names
    CDO-I
    cysteine dioxygenase type I
    NP_149026.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_033037.4NP_149026.1  cysteine dioxygenase type 1

      See identical proteins and their annotated locations for NP_149026.1

      Status: VALIDATED

      Source sequence(s)
      AK149582, CX222492
      Consensus CDS
      CCDS29234.1
      UniProtKB/Swiss-Prot
      P60334, Q3UED8
      Related
      ENSMUSP00000046517.8, ENSMUST00000035804.9
      Conserved Domains (1) summary
      pfam05995
      Location:2170
      CDO_I; Cysteine dioxygenase type I

    RNA

    1. NR_151681.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC123927

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      46846260..46861569 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)