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    Defa-ps1 defensin, alpha, pseudogene 1 [ Mus musculus (house mouse) ]

    Gene ID: 727720, updated on 8-Feb-2024

    Summary

    Official Symbol
    Defa-ps1provided by MGI
    Official Full Name
    defensin, alpha, pseudogene 1provided by MGI
    Primary source
    MGI:MGI:3630392
    See related
    Ensembl:ENSMUSG00000095813 AllianceGenome:MGI:3630392
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Crypi; Defcr-ps1; Defcr-ps26
    Expression
    Biased expression in large intestine adult (RPKM 157.5), duodenum adult (RPKM 103.2) and 1 other tissue See more
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    Genomic context

    Location:
    8 A2; 8 10.35 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (22185028..22185869)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (21695012..21695853)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene defensin, alpha, 17 Neighboring gene defensin, alpha, 34 Neighboring gene STARR-seq mESC enhancer starr_20890 Neighboring gene STARR-seq mESC enhancer starr_20891 Neighboring gene predicted gene, 22447 Neighboring gene defensin, alpha, 39 Neighboring gene zinc finger, MYM-type 5 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Other Names

    • 129 cryptdin i
    • defensin-related cryptdin pseudogene 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003146.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AY746431
      Related
      ENSMUST00000119062.5

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      22185028..22185869
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)