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    Plbd2 phospholipase B domain containing 2 [ Mus musculus (house mouse) ]

    Gene ID: 71772, updated on 16-Oct-2021

    Summary

    Official Symbol
    Plbd2provided by MGI
    Official Full Name
    phospholipase B domain containing 2provided by MGI
    Primary source
    MGI:MGI:1919022
    See related
    Ensembl:ENSMUSG00000029598
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    P76; AU019810; 1300012G16Rik
    Expression
    Ubiquitous expression in adrenal adult (RPKM 51.3), testis adult (RPKM 42.1) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Plbd2 in Genome Data Viewer
    Location:
    5; 5 F
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (120621958..120641688, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (120483893..120503623, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (120933902..120953632, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene LIM homeobox protein 5 Neighboring gene serine dehydratase-like Neighboring gene serine dehydratase Neighboring gene solute carrier family 8 (sodium/lithium/calcium exchanger), member B1 Neighboring gene two pore channel 1 Neighboring gene IQ motif containing D

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables phospholipase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within lipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in phospholipid catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in extracellular region IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in lysosome IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    putative phospholipase B-like 2
    Names
    66.3 kDa protein
    76 kDa protein
    LAMA-like protein 2
    lamina ancestor homolog 2
    phospholipase B domain-containing protein 2
    NP_076114.2
    XP_030110675.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_023625.4NP_076114.2  putative phospholipase B-like 2 precursor

      See identical proteins and their annotated locations for NP_076114.2

      Status: VALIDATED

      Source sequence(s)
      AK029813, AK042089, AK043608
      Consensus CDS
      CCDS19620.1
      UniProtKB/Swiss-Prot
      Q3TCN2
      Related
      ENSMUSP00000031597.7, ENSMUST00000031597.7
      Conserved Domains (1) summary
      pfam04916
      Location:86589
      Phospholip_B; Phospholipase B

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      120621958..120641688 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030254815.2XP_030110675.1  putative phospholipase B-like 2 isoform X1

      Conserved Domains (1) summary
      pfam04916
      Location:1315
      Phospholip_B; Phospholipase B
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