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    Gm11476 predicted gene 11476 [ Mus musculus (house mouse) ]

    Gene ID: 102634096, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Gm11476provided by MGI
    Official Full Name
    predicted gene 11476provided by MGI
    Primary source
    MGI:MGI:3705135
    See related
    Ensembl:ENSMUSG00000085596 AllianceGenome:MGI:3705135
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Gm11476 in Genome Data Viewer
    Location:
    2 H3; 2 87.35 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (167395232..167450061)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (167553312..167607850)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr2:167363409-167363710 Neighboring gene predicted gene 11474 Neighboring gene snail family zinc finger 1 Neighboring gene STARR-seq mESC enhancer starr_06436 Neighboring gene predicted gene, 31619 Neighboring gene STARR-positive B cell enhancer ABC_E4523 Neighboring gene STARR-seq mESC enhancer starr_06439 Neighboring gene ribosomal protein L18 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E10162 Neighboring gene ubiquitin-conjugating enzyme E2 variant 1 Neighboring gene STARR-positive B cell enhancer ABC_E820 Neighboring gene STARR-positive B cell enhancer ABC_E3420 Neighboring gene predicted gene, 31852 Neighboring gene STARR-positive B cell enhancer ABC_E11175 Neighboring gene STARR-positive B cell enhancer ABC_E7889 Neighboring gene plasmanylethanolamine desaturase 1 Neighboring gene STARR-positive B cell enhancer ABC_E2657

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      167395232..167450061
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_866991.3 RNA Sequence

      Related
      ENSMUST00000127006.2

    2. XR_866988.4 RNA Sequence

    3. XR_866986.4 RNA Sequence

    4. XR_866990.4 RNA Sequence

    5. XR_375262.5 RNA Sequence

    6. XR_866987.3 RNA Sequence

    7. XR_001783575.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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