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    Hoxa3l1 homeobox A3 like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102546856, updated on 29-Feb-2024

    Summary

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    Official Symbol
    Hoxa3l1provided by RGD
    Official Full Name
    homeobox A3 like 1provided by RGD
    Primary source
    RGD:7620814
    See related
    AllianceGenome:RGD:7620814
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Hoxa3
    Expression
    Biased expression in Kidney (RPKM 84.4), Lung (RPKM 39.4) and 8 other tissues See more
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    Genomic context

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    See Hoxa3l1 in Genome Data Viewer
    Location:
    4q24
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (82605930..82623670)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (81275313..81293064)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 Unlocalized Scaffold NW_007906169.1 (61851..63464)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene Hoxa transcript antisense RNA, myeloid-specific 1 Neighboring gene homeobox A2 Neighboring gene homeobox A3 Neighboring gene uncharacterized LOC120102276 Neighboring gene homeo box A4 Neighboring gene Hoxa cluster antisense RNA 3 Neighboring gene homeo box A5 Neighboring gene homeobox A6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    vasodilator-stimulated phosphoprotein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      82605930..82623670
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039108677.2 → XP_038964605.1  vasodilator-stimulated phosphoprotein-like

    RNA

    1. XR_005503581.2 RNA Sequence

    2. XR_005503580.2 RNA Sequence

    3. XR_362650.4 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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