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    AA684185 expressed sequence AA684185 [ Mus musculus (house mouse) ]

    Gene ID: 100040632, updated on 8-Feb-2024

    Summary

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    Official Symbol
    AA684185provided by MGI
    Official Full Name
    expressed sequence AA684185provided by MGI
    Gene description
    Snw1-like pseudogene
    Primary source
    MGI:MGI:3034637
    See related
    AllianceGenome:MGI:3034637
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm10528
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    Genomic context

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    See AA684185 in Genome Data Viewer
    Location:
    18 E3; 18
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (80055563..80057040)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (80012563..80012951)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene nucleolar and spindle associated protein 1 pseudogene Neighboring gene predicted gene 5823 Neighboring gene STARR-seq mESC enhancer starr_45160 Neighboring gene STARR-seq mESC enhancer starr_45161 Neighboring gene STARR-positive B cell enhancer ABC_E11006 Neighboring gene STARR-seq mESC enhancer starr_45162 Neighboring gene STARR-seq mESC enhancer starr_45163 Neighboring gene predicted gene, 36627 Neighboring gene predicted gene, 36718

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Other Names

    • Snw1-like pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_183077.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC127331

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      80055563..80057040
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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