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    AT2G39240 RNA polymerase I specific transcription initiation factor RRN3 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818509, updated on 15-Oct-2023

    Summary

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    Gene symbol
    AT2G39240
    Gene description
    RNA polymerase I specific transcription initiation factor RRN3 protein
    Primary source
    Araport:AT2G39240
    Locus tag
    AT2G39240
    See related
    TAIR:AT2G39240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T16B24.12; T16B24_12
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    Genomic context

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    See AT2G39240 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    15
    Sequence:
    Chromosome: 2; NC_003071.7 (16384786..16388502, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene LATERAL ORGAN JUNCTION Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene regulator of nonsense transcripts UPF2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA polymerase I general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase I promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase I specific transcription initiation factor RRN3 protein
    NP_181457.2
    • RNA polymerase I specific transcription initiation factor RRN3 protein; FUNCTIONS IN: RNA polymerase I transcription factor activity, binding; CONTAINS InterPro DOMAIN/s: RNA polymerase I specific transcription initiation factor RRN3 (InterPro:IPR007991), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RNA polymerase I specific transcription initiation factor RRN3 protein (TAIR:AT2G34750.1); Has 362 Blast hits to 352 proteins in 169 species: Archae - 0; Bacteria - 2; Metazoa - 117; Fungi - 131; Plants - 65; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16384786..16388502 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336761.1 → NP_001324384.1  RNA polymerase I specific transcription initiation factor RRN3 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VWV2, Q1PEV9

    2. NM_129482.3 → NP_181457.2  RNA polymerase I specific transcription initiation factor RRN3 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181457.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VWV2, Q1PEV9
    Nucleotide Protein
    Heading Accession and Version

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