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    PnsB1 NDH-dependent cyclic electron flow 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838168, updated on 15-Oct-2023

    Summary

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    Gene symbol
    PnsB1
    Gene description
    NDH-dependent cyclic electron flow 1
    Primary source
    Araport:AT1G15980
    Locus tag
    AT1G15980
    See related
    TAIR:AT1G15980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    NAD(P)H DEHYDROGENASE SUBUNIT 48; NDF1; NDH-dependent cyclic electron flow 1; NDH48; Photosynthetic NDH subcomplex B 1; T24D18.8; T24D18_8
    Summary
    encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.
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    Genomic context

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    See PnsB1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (5489145..5491363)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene cinnamoyl coa reductase 1 Neighboring gene NRAMP metal ion transporter 6 Neighboring gene DNA glycosylase superfamily protein Neighboring gene cyclic nucleotide gated channel 7 Neighboring gene GAG1At protein Neighboring gene magnesium transporter 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel nuclear-encoded subunits of the chloroplast NAD(P)H dehydrogenase complex. Sirpiö S, et al. J Biol Chem, 2009 Jan 9. PMID 18974055
    2. Three novel subunits of Arabidopsis chloroplastic NAD(P)H dehydrogenase identified by bioinformatic and reverse genetic approaches. Takabayashi A, et al. Plant J, 2009 Jan. PMID 18785996
    3. Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID. Mair A, et al. Elife, 2019 Sep 19. PMID 31535972, Free PMC Article
    4. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    5. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_101466.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within photosynthetic electron transport in photosystem I IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NAD(P)H dehydrogenase complex (plastoquinone) IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of NAD(P)H dehydrogenase complex (plastoquinone) IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid HDA PubMed 
    located_in chloroplast thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    NDH-dependent cyclic electron flow 1
    NP_563986.1
    • NDH-dependent cyclic electron flow 1 (NDF1); INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 119 Blast hits to 119 proteins in 57 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5489145..5491363
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101466.3 → NP_563986.1  NDH-dependent cyclic electron flow 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563986.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9S9N6
      UniProtKB/TrEMBL
      A0A178WIH5, A0A5S9UMY1
      Conserved Domains (1) summary
      cl10013
      Location:130 → 412
      Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9S9N6.1

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