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    AT1G16040 phosphatidylinositol-glycan biosynthesis class F-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838175, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT1G16040
    Gene description
    phosphatidylinositol-glycan biosynthesis class F-like protein
    Primary source
    Araport:AT1G16040
    Locus tag
    AT1G16040
    See related
    TAIR:AT1G16040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT1G16050; T24D18.15; T24D18_15
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    Genomic context

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    See AT1G16040 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (5504608..5507059)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene heat shock protein 70B Neighboring gene ARIA-interacting double AP2 domain protein Neighboring gene tubby like protein 8 Neighboring gene nuclear protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001332201.1
    NM_001332202.1
    NM_001332203.1
    NM_101472.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in GPI anchor biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    phosphatidylinositol-glycan biosynthesis class F-like protein
    NP_173056.2
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI biosynthesis protein Pig-F (InterPro:IPR009580); Has 280 Blast hits to 280 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 111; Plants - 44; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5504608..5507059
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101472.3 → NP_173056.2  phosphatidylinositol-glycan biosynthesis class F-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173056.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EC98, A0A7G2DVS7, Q8GWH6
      Conserved Domains (1) summary
      pfam06699
      Location:49 → 198
      PIG-F; GPI biosynthesis protein family Pig-F

    2. NM_001332202.1 → NP_001320970.1  phosphatidylinositol-glycan biosynthesis class F-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8APM1, A0A7G2DVS7

    3. NM_001332203.1 → NP_001320969.1  phosphatidylinositol-glycan biosynthesis class F-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8APH0, A0A7G2DVS7

    4. NM_001332201.1 → NP_001320971.1  phosphatidylinositol-glycan biosynthesis class F-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WB14, A0A1P8APF0
    Nucleotide Protein
    Heading Accession and Version

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