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    TLP8 tubby like protein 8 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838177, updated on 7-Sep-2023

    Summary

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    Gene symbol
    TLP8
    Gene description
    tubby like protein 8
    Primary source
    Araport:AT1G16070
    Locus tag
    AT1G16070
    See related
    TAIR:AT1G16070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtTLP8; T24D18.17; T24D18_17; tubby like protein 8
    Summary
    Member of TLP family
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    Genomic context

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    See TLP8 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (5510301..5513980, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene heat shock protein 70B Neighboring gene phosphatidylinositol-glycan biosynthesis class F-like protein Neighboring gene ARIA-interacting double AP2 domain protein Neighboring gene nuclear protein Neighboring gene wall associated kinase-like 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The subcellular localization of Tubby-like proteins and participation in stress signaling and root colonization by the mutualist Piriformospora indica. Reitz MU, et al. Plant Physiol, 2012 Sep. PMID 22751378, Free PMC Article
    2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001332209.1
    NM_001332210.1
    NM_101475.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tubby like protein 8
    NP_001319017.1
    • tubby like protein 8 (TLP8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 6 (TAIR:AT1G47270.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_173059.1
    • tubby like protein 8 (TLP8); CONTAINS InterPro DOMAIN/s: Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 1 (TAIR:AT1G76900.2); Has 842 Blast hits to 842 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 340; Fungi - 21; Plants - 410; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5510301..5513980 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101475.3 → NP_173059.1  tubby like protein 8 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173059.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L848, Q9S9M8
      UniProtKB/TrEMBL
      A0A178WHW0, A0A5S9UN19, A0A654EBU2
      Conserved Domains (1) summary
      pfam01167
      Location:153 → 391
      Tub; Tub family

    2. NM_001332210.1 → NP_001322582.1  tubby like protein 8 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AUE4

    3. NM_001332209.1 → NP_001319017.1  tubby like protein 8 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WHX2, A0A5S9UN19, A0A654EBU2, F4I2T3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9S9M8.1

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