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    AT5G08400 structural maintenance of chromosomes-like protein, putative (DUF3531) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830738, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT5G08400
    Gene description
    structural maintenance of chromosomes-like protein, putative (DUF3531)
    Primary source
    Araport:AT5G08400
    Locus tag
    AT5G08400
    See related
    TAIR:AT5G08400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8L15.130; F8L15_130
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    Genomic context

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    See AT5G08400 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (2706458..2708946, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene alpha-galactosidase 1 Neighboring gene transmembrane protein, putative (DUF 3339) Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene Radical SAM superfamily protein Neighboring gene ferredoxin/thioredoxin reductase subunit A (variable subunit) 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001036779.2
    NM_120924.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    structural maintenance of chromosomes-like protein, putative (DUF3531)
    NP_001031856.1
    • Protein of unknown function (DUF3531); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3531 (InterPro:IPR021920); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3531) (TAIR:AT4G29400.1); Has 314 Blast hits to 314 proteins in 83 species: Archae - 0; Bacteria - 120; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).
    NP_196457.2
    • Protein of unknown function (DUF3531); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3531 (InterPro:IPR021920); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3531) (TAIR:AT4G29400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2706458..2708946 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036779.2 → NP_001031856.1  structural maintenance of chromosomes-like protein, putative (DUF3531) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031856.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U9H6, A0A5S9Y4P7, A0A654FZZ0, A0A7G2F633, B9DGL0, F4KB18
      Conserved Domains (1) summary
      pfam12049
      Location:151 → 288
      DUF3531; Protein of unknown function (DUF3531)

    2. NM_120924.3 → NP_196457.2  structural maintenance of chromosomes-like protein, putative (DUF3531) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196457.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y4P7, A0A654FZZ0, A0A7G2F633, B9DGL0, Q8VZD1
      Conserved Domains (1) summary
      pfam12049
      Location:184 → 321
      DUF3531; Protein of unknown function (DUF3531)
    Nucleotide Protein
    Heading Accession and Version

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