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    EXPA12 expansin 12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820776, updated on 15-Oct-2023

    Summary

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    Gene symbol
    EXPA12
    Gene description
    expansin 12
    Primary source
    Araport:AT3G15370
    Locus tag
    AT3G15370
    See related
    TAIR:AT3G15370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATEXP12; ATEXPA12; ATHEXP ALPHA 1.24; EXP12; expansin 12; EXPANSIN 12
    Summary
    member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
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    Genomic context

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    See EXPA12 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (5190554..5192197)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene phosphopantothenoylcysteine decarboxylase subunit Neighboring gene thioredoxin M-type 4 Neighboring gene Plasma-membrane choline transporter family protein Neighboring gene silencing defective 5 Neighboring gene HrpN-interacting protein from malus protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expansins: ever-expanding numbers and functions. Lee Y, et al. Curr Opin Plant Biol, 2001 Dec. PMID 11641069
    2. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_112405.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within plant-type cell wall loosening NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in plant-type cell wall organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within unidimensional cell growth NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    expansin 12
    NP_188156.1
    • expansin 12 (EXPA12); INVOLVED IN: plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A17 (TAIR:AT4G01630.1); Has 2144 Blast hits to 2141 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 40; Plants - 2066; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5190554..5192197
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338165.1 → NP_001327548.1  expansin 12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LSN2, A0A5S9XCD6, A0A654F934

    2. NM_112405.3 → NP_188156.1  expansin 12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188156.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q53XE5, Q9LDJ3
      UniProtKB/TrEMBL
      A0A178VC47, A0A5S9XCD6, A0A654F934
      Conserved Domains (1) summary
      PLN00193
      Location:25 → 246
      PLN00193; expansin-A; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LDJ3.1

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