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    Pabir3 PABIR family member 3 [ Mus musculus (house mouse) ]

    Gene ID: 73866, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Pabir3provided by MGI
    Official Full Name
    PABIR family member 3provided by MGI
    Primary source
    MGI:MGI:1921116
    See related
    Ensembl:ENSMUSG00000036013 AllianceGenome:MGI:1921116
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fam122c; 4930432H15Rik; 4930527G05Rik
    Summary
    Predicted to enable protein serine/threonine phosphatase inhibitor activity. Predicted to be involved in mitotic G2/M transition checkpoint. Predicted to be active in cytoplasm and nucleus. Orthologous to human PABIR3 (PABIR family member 3). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 12.2) See more
    Orthologs
    human all
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    Genomic context

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    See Pabir3 in Genome Data Viewer
    Location:
    X A5; X 29.45 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (52362296..52420063)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (53273419..53331186)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 35988 Neighboring gene placental specific protein 1 Neighboring gene PABIR family member 2 Neighboring gene ribosomal protein L13 pseudogene Neighboring gene motile sperm domain containing 1 Neighboring gene casein kinase 1, gamma 3 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein serine/threonine phosphatase inhibitor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in mitotic G2/M transition checkpoint IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM122C
    Names
    family with sequence similarity 122, member C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028671.3 → NP_082947.1  protein FAM122C

      See identical proteins and their annotated locations for NP_082947.1

      Status: VALIDATED

      Source sequence(s)
      AK015288, AK015916
      Consensus CDS
      CCDS40973.1
      UniProtKB/TrEMBL
      Q9D514, Q9D5J5
      Related
      ENSMUSP00000110484.2, ENSMUST00000114835.8

    RNA

    1. NR_153099.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC147640, BX679674

    2. NR_153100.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK015288, BX679674

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      52362296..52420063
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006541549.5 → XP_006541612.1  protein FAM122C isoform X1

      See identical proteins and their annotated locations for XP_006541612.1

      UniProtKB/TrEMBL
      Q9D514, Q9D5J5

    2. XM_006541548.1 → XP_006541611.1  protein FAM122C isoform X1

      See identical proteins and their annotated locations for XP_006541611.1

      UniProtKB/TrEMBL
      Q9D514, Q9D5J5
      Related
      ENSMUSP00000127499.2, ENSMUST00000124137.8
    Nucleotide Protein Strain
    Heading Accession and Version

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