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    LOC4342609 probable glycosyltransferase At5g03795 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342609, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4342609
    Gene description
    probable glycosyltransferase At5g03795
    Locus tag
    OSNPB_070188700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in mature seeds (RPKM 3.6), milk grains (RPKM 2.0) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4729451..4733408)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic Neighboring gene protein CHUP1, chloroplastic Neighboring gene methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial Neighboring gene putative F-box/kelch-repeat protein At3g17280 Neighboring gene uncharacterized LOC4342611

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable glycosyltransferase At5g03795
    Names
    OSJNBb0002L09.8-1
    OSJNBb0002L09.8-2
    OSJNBb0002L09.8-3
    OSJNBb0084L07.20-1
    OSJNBb0084L07.20-2
    OSJNBb0084L07.20-3
    Os07g0188700
    limonene cyclase like protein
    putative pectin-glucuronyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      4729451..4733408
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791740.2 → XP_015647226.1  probable glycosyltransferase At5g03795

      UniProtKB/TrEMBL
      A0A0N7KN20, A2YIY4, Q0D828, Q6Z4E7
      Conserved Domains (1) summary
      pfam03016
      Location:268 → 553
      Exostosin; Exostosin family
    Nucleotide Protein
    Heading Accession and Version

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