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    Ssty2 spermiogenesis specific transcript on the Y 2 [ Mus musculus (house mouse) ]

    Gene ID: 70009, updated on 8-Feb-2024

    Summary

    Official Symbol
    Ssty2provided by MGI
    Official Full Name
    spermiogenesis specific transcript on the Y 2provided by MGI
    Primary source
    MGI:MGI:1917259
    See related
    Ensembl:ENSMUSG00000095302 AllianceGenome:MGI:1917259
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    pc11; 1700029H17Rik
    Summary
    Predicted to enable methylated histone binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in cytosol and nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

    See Ssty2 in Genome Data Viewer
    Location:
    Y; Y C3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) Y NC_000087.8 (67057012..67059341, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) Y NC_000087.7 (67045743..67048072, complement)

    Chromosome Y - NC_000087.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 20933 Neighboring gene predicted gene, 20852 Neighboring gene predicted gene 28646 Neighboring gene predicted gene, 21114

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Clone Names

    • MGC107175

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables methylated histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    spermiogenesis specific transcript on the Y 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_023546.3NP_076035.3  spermiogenesis specific transcript on the Y 2

      See identical proteins and their annotated locations for NP_076035.3

      Status: VALIDATED

      Source sequence(s)
      AC137982, BC117086
      Consensus CDS
      CCDS85893.1
      UniProtKB/TrEMBL
      Q149W4, Q62456
      Related
      ENSMUSP00000139505.2, ENSMUST00000190565.2
      Conserved Domains (1) summary
      pfam02513
      Location:2170
      Spin-Ssty; Spin/Ssty Family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000087.8 Reference GRCm39 C57BL/6J

      Range
      67057012..67059341 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)