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    Lyrm1 LYR motif containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 365361, updated on 6-Jun-2024

    Summary

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    Official Symbol
    Lyrm1provided by RGD
    Official Full Name
    LYR motif containing 1provided by RGD
    Primary source
    RGD:1563498
    See related
    Ensembl:ENSRNOG00000024530 AllianceGenome:RGD:1563498
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563498
    Summary
    Predicted to be located in midbody and nucleoplasm. Orthologous to human LYRM1 (LYR motif containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Heart (RPKM 35.1), Testes (RPKM 34.8) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Lyrm1 in Genome Data Viewer
    Location:
    1q35
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (183715941..183736406)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (174284116..174305053)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (189665401..189685842)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene ERI1 exoribonuclease family member 2 Neighboring gene acyl-CoA synthetase medium-chain family member 3 Neighboring gene RNA exonuclease 5 Neighboring gene defective in cullin neddylation 1 domain containing 3 Neighboring gene dynein, axonemal, heavy chain 3 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC120099919

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in midbody ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    LYR motif-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001276487.1 → NP_001263416.1  LYR motif-containing protein 1

      See identical proteins and their annotated locations for NP_001263416.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/Swiss-Prot
      B2RYU8
      UniProtKB/TrEMBL
      A6I8P6
      Conserved Domains (1) summary
      cd20261
      Location:8 → 83
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      183715941..183736406
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039085231.2 → XP_038941159.2  LYR motif-containing protein 1 isoform X2

    2. XM_006230134.5 → XP_006230196.5  LYR motif-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      B2RYU8
      UniProtKB/TrEMBL
      A6I8P6

    3. XM_063269490.1 → XP_063125560.1  LYR motif-containing protein 1 isoform X2

    4. XM_006230133.4 → XP_006230195.1  LYR motif-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006230195.1

      UniProtKB/Swiss-Prot
      B2RYU8
      UniProtKB/TrEMBL
      A6I8P6
      Conserved Domains (1) summary
      cd20261
      Location:8 → 83
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

    5. XM_006230132.5 → XP_006230194.1  LYR motif-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006230194.1

      UniProtKB/Swiss-Prot
      B2RYU8
      UniProtKB/TrEMBL
      A6I8P6
      Conserved Domains (1) summary
      cd20261
      Location:8 → 83
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

    6. XM_039085239.2 → XP_038941167.1  LYR motif-containing protein 1 isoform X3

      UniProtKB/Swiss-Prot
      B2RYU8
      UniProtKB/TrEMBL
      G3V950
      Related
      ENSRNOP00000035782.6
      Conserved Domains (1) summary
      cd20261
      Location:31 → 106
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001108918.1: Suppressed sequence

      Description
      NM_001108918.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B2RYU8.1 GenPept UniProtKB/Swiss-Prot:B2RYU8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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