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    Gas5 growth arrest specific 5 [ Mus musculus (house mouse) ]

    Gene ID: 14455, updated on 17-Jan-2022

    Summary

    Official Symbol
    Gas5provided by MGI
    Official Full Name
    growth arrest specific 5provided by MGI
    Primary source
    MGI:MGI:95659
    See related
    Ensembl:ENSMUSG00000053332
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gas-5; Snhg2; Mir5117
    Summary
    Acts upstream of or within response to bacterium. Is expressed in several structures, including alimentary system; brain; metanephros; respiratory system; and sensory organ. Orthologous to human GAS5 (growth arrest specific 5). [provided by Alliance of Genome Resources, Nov 2021]
    Expression
    Broad expression in liver E14 (RPKM 95.8), CNS E11.5 (RPKM 88.1) and 16 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Gas5 in Genome Data Viewer
    Location:
    1; 1 H2.1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (160862171..160866109)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (161034601..161038539)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (162965297..162968668)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene RING CCCH (C3H) domains 1 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1 Neighboring gene zinc finger and BTB domain containing 37 Neighboring gene predicted gene, 26224 Neighboring gene predicted gene, 22489 Neighboring gene predicted gene, 22357 Neighboring gene predicted gene, 23212 Neighboring gene small nucleolar RNA, C/D box 78 Neighboring gene small nucleolar RNA, C/D box 80 Neighboring gene small nucleolar RNA, C/D box 47 Neighboring gene predicted gene, 25789 Neighboring gene aspartyl-tRNA synthetase 2 (mitochondrial) Neighboring gene centromere protein L

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Clone Names

    • MGC6251

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to bacterium IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_153812.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC163327
      Related
      ENSMUST00000162558.8
    2. NR_153813.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC163327
      Related
      ENSMUST00000159706.8
    3. NR_153814.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC163327
    4. NR_153815.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC163327
    5. NR_166050.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC163327
      Related
      ENSMUST00000159663.8
    6. NR_166051.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC163327
    7. NR_166052.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC163327
    8. NR_166055.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC163327

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      160862171..160866109
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_013525.1: Suppressed sequence

      Description
      NM_013525.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
    2. NR_002840.2: Suppressed sequence

      Description
      NR_002840.2: This RefSeq was removed because it is primarily intronic sequence.
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