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    Iqch IQ motif containing H [ Mus musculus (house mouse) ]

    Gene ID: 78250, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Iqchprovided by MGI
    Official Full Name
    IQ motif containing Hprovided by MGI
    Primary source
    MGI:MGI:1925500
    See related
    Ensembl:ENSMUSG00000037801 AllianceGenome:MGI:1925500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4921504K03Rik
    Summary
    Orthologous to human IQCH (IQ motif containing H). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 14.3) See more
    Orthologs
    human all
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    Genomic context

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    Location:
    9 C; 9 34.08 cM
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (63328522..63509808, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (63421421..63602526, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase 5 Neighboring gene predicted gene, 39355 Neighboring gene STARR-positive B cell enhancer ABC_E5077 Neighboring gene RIKEN cDNA 2300009A05 gene Neighboring gene STARR-positive B cell enhancer mm9_chr9:63247761-63248062 Neighboring gene predicted gene, 16759 Neighboring gene STARR-seq mESC enhancer starr_24397 Neighboring gene predicted gene, 25995 Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 17 pseudogene Neighboring gene STARR-seq mESC enhancer starr_24398 Neighboring gene STARR-seq mESC enhancer starr_24399 Neighboring gene predicted gene, 39358 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:63458940-63459049 Neighboring gene alpha- and gamma-adaptin binding protein Neighboring gene SMAD family member 3 Neighboring gene STARR-positive B cell enhancer ABC_E6753 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:63568712-63568904 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:63585488-63585725 Neighboring gene predicted gene, 51710

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Identification of a novel testis-specific gene and its potential roles in testis development/spermatogenesis. Yin LL, et al. Asian J Androl, 2005 Jun. PMID 15897968
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC176008

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    IQ domain-containing protein H

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001311098.1 → NP_001298027.1  IQ domain-containing protein H isoform 1

      See identical proteins and their annotated locations for NP_001298027.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC122057, AK019535, AK029502, BB610295
      Consensus CDS
      CCDS81021.1
      UniProtKB/Swiss-Prot
      G5E8B0, Q8C0X9, Q9D2K4
      UniProtKB/TrEMBL
      E9PUW2
      Related
      ENSMUSP00000047953.5, ENSMUST00000042322.11

    2. NM_030068.2 → NP_084344.1  IQ domain-containing protein H isoform 2

      See identical proteins and their annotated locations for NP_084344.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region compared to variant 1. It encodes isoform 2, which is shorter than isoform 1.
      Source sequence(s)
      AC122057, AK019535, BB610295, BC141047
      Consensus CDS
      CCDS52831.1
      UniProtKB/TrEMBL
      B2RUB3, B7ZNG8
      Related
      ENSMUSP00000126546.2, ENSMUST00000163982.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      63328522..63509808 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006511557.5 → XP_006511620.1  IQ domain-containing protein H isoform X5

      UniProtKB/TrEMBL
      E9PUW2
      Related
      ENSMUSP00000079370.6, ENSMUST00000080527.12

    2. XM_006511553.5 → XP_006511616.1  IQ domain-containing protein H isoform X1

      UniProtKB/TrEMBL
      E9PUW2

    3. XM_006511555.5 → XP_006511618.1  IQ domain-containing protein H isoform X3

      UniProtKB/TrEMBL
      E9PUW2

    4. XM_006511554.5 → XP_006511617.1  IQ domain-containing protein H isoform X2

      UniProtKB/TrEMBL
      B7ZNG8

    5. XM_006511556.4 → XP_006511619.1  IQ domain-containing protein H isoform X4

      UniProtKB/TrEMBL
      E9PUW2

    RNA

    1. XR_003948058.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9D2K4.3 GenPept UniProtKB/Swiss-Prot:Q9D2K4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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