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    Pcp4l1 Purkinje cell protein 4-like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 685448, updated on 3-Apr-2024

    Summary

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    Official Symbol
    Pcp4l1provided by RGD
    Official Full Name
    Purkinje cell protein 4-like 1provided by RGD
    Primary source
    RGD:1593809
    See related
    AllianceGenome:RGD:1593809
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human PCP4L1 (Purkinje cell protein 4 like 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Heart (RPKM 73.3), Brain (RPKM 64.1) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Pcp4l1 in Genome Data Viewer
    Location:
    13q24
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (86121463..86145097, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (83588992..83612631, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (89542377..89565920, complement)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene succinate dehydrogenase complex subunit C Neighboring gene myelin protein zero Neighboring gene nuclear receptor subfamily 1, group I, member 3 Neighboring gene translocase of outer mitochondrial membrane 40 like Neighboring gene apolipoprotein A2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Purkinje cell protein 4-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001126093.2 → NP_001119565.1  Purkinje cell protein 4-like protein 1

      See identical proteins and their annotated locations for NP_001119565.1

      Status: PROVISIONAL

      Source sequence(s)
      BC086330
      UniProtKB/TrEMBL
      A0A8J8XIE2, B1WC83, D4A945

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      86121463..86145097 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017598936.3 → XP_017454425.1  Purkinje cell protein 4-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A6JFU7

    2. XM_063272605.1 → XP_063128675.1  Purkinje cell protein 4-like protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I6AUS6
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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