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    AT1G52710 Rubredoxin-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841704, updated on 15-Oct-2023

    Summary

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    Gene symbol
    AT1G52710
    Gene description
    Rubredoxin-like superfamily protein
    Primary source
    Araport:AT1G52710
    Locus tag
    AT1G52710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6D8.4; F6D8_4
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    Genomic context

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    See AT1G52710 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (19638285..19640512, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene uncharacterized protein Neighboring gene Transducin/WD40 repeat-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001198276.2
    NM_104149.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in mitochondrial electron transport, cytochrome c to oxygen IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of mitochondrial respiratory chain complex IV IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Rubredoxin-like superfamily protein
    NP_001185205.1
    • Rubredoxin-like superfamily protein; INVOLVED IN: biological_process unknown.
    NP_175680.2
    • Rubredoxin-like superfamily protein; FUNCTIONS IN: cytochrome-c oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial envelope; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit Vb (InterPro:IPR002124); BEST Arabidopsis thaliana protein match is: Rubredoxin-like superfamily protein (TAIR:AT3G15640.1); Has 289 Blast hits to 289 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 22; Plants - 78; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19638285..19640512 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198276.2 → NP_001185205.1  Rubredoxin-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185205.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SSS5

    2. NM_104149.2 → NP_175680.2  Rubredoxin-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175680.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IEJ9, Q8GW54, Q9SSS5
      UniProtKB/TrEMBL
      A0A5S9WPD0
      Conserved Domains (1) summary
      cl00016
      Location:4 → 90
      Cyt_c_Oxidase_Vb; Cytochrome c oxidase subunit Vb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SSS5.2

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