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    CG11317 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 43676, updated on 10-May-2024

    Summary

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    Official Symbol
    CG11317provided by FlyBase
    Primary source
    FLYBASE:FBgn0039816
    Locus tag
    Dmel_CG11317
    See related
    AllianceGenome:FB:FBgn0039816
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG11317
    Summary
    Is expressed in embryonic brain; larval ventral nerve cord; and lateral cord neurons. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See CG11317 in Genome Data Viewer
    Location:
    100B2-100B2; 3-102 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (31090712..31097321, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (26916434..26923043, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene discs overgrown Neighboring gene Sox100B Neighboring gene uncharacterized protein Neighboring gene mayo

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sox100B, a Drosophila group E Sox-domain gene, is required for somatic testis differentiation. Nanda S, et al. Sex Dev, 2009. PMID 19339815, Free PMC Article
    2. Combining Developmental and Perturbation-Seq Uncovers Transcriptional Modules Orchestrating Neuronal Remodeling. Alyagor I, et al. Dev Cell, 2018 Oct 8. PMID 30300589, Free PMC Article
    3. A large-scale resource for tissue-specific CRISPR mutagenesis in Drosophila. Port F, et al. Elife, 2020 Feb 13. PMID 32053108, Free PMC Article
    4. A single-cell transcriptomic atlas of complete insect nervous systems across multiple life stages. Corrales M, et al. Neural Dev, 2022 Aug 24. PMID 36002881, Free PMC Article
    5. Cellular diversity in the Drosophila midbrain revealed by single-cell transcriptomics. Croset V, et al. Elife, 2018 Apr 19. PMID 29671739, Free PMC Article

    See all (27) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG11317-PA
    CG11317-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      31090712..31097321 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_143583.4 → NP_651840.1  uncharacterized protein Dmel_CG11317, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651840.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95TC6, Q9VA15
      Related
      FBpp0085103
      Conserved Domains (1) summary
      sd00017
      Location:207 → 224
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. NM_001276204.1 → NP_001263133.1  uncharacterized protein Dmel_CG11317, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001263133.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KI67
      Conserved Domains (1) summary
      sd00017
      Location:210 → 227
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4KI67 A0A0B4KI67
    Q9VA15 Q9VA15

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