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    BC048671 cDNA sequence BC048671 [ Mus musculus (house mouse) ]

    Gene ID: 243535, updated on 5-Mar-2024

    Summary

    Official Symbol
    BC048671provided by MGI
    Official Full Name
    cDNA sequence BC048671provided by MGI
    Primary source
    MGI:MGI:2679261
    See related
    Ensembl:ENSMUSG00000049694 AllianceGenome:MGI:2679261
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C3orf22 (chromosome 3 open reading frame 22). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 114.4) See more
    Orthologs
    NEW
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    Genomic context

    Location:
    6 D1; 6 40.12 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (90278201..90282430)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (90301219..90305448)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor, pseudogene 34 Neighboring gene vomeronasal 1 receptor 54 Neighboring gene carbohydrate sulfotransferase 13 Neighboring gene urocanase domain containing 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Clone Names

    • MGC58841

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C3orf22 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001358298.1NP_001345227.1  uncharacterized protein C3orf22 homolog

      Status: VALIDATED

      Source sequence(s)
      AC122521, AK077180, BC048671
      Consensus CDS
      CCDS20357.1
      UniProtKB/Swiss-Prot
      Q8C5S3
      Related
      ENSMUSP00000132052.3, ENSMUST00000167550.4
    2. NM_177738.3NP_808406.1  uncharacterized protein C3orf22 homolog

      See identical proteins and their annotated locations for NP_808406.1

      Status: VALIDATED

      Source sequence(s)
      AC122521, AK077180
      Consensus CDS
      CCDS20357.1
      UniProtKB/Swiss-Prot
      Q8C5S3
      Related
      ENSMUSP00000058483.3, ENSMUST00000054799.9

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      90278201..90282430
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)