U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    C4h2orf68 similar to human chromosome 2 open reading frame 68 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 691113, updated on 13-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    C4h2orf68provided by RGD
    Official Full Name
    similar to human chromosome 2 open reading frame 68provided by RGD
    Primary source
    RGD:1587471
    See related
    Ensembl:ENSRNOG00000011713 AllianceGenome:RGD:1587471
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human C2orf68 (chromosome 2 open reading frame 68). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Thymus (RPKM 62.5), Liver (RPKM 62.5) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See C4h2orf68 in Genome Data Viewer
    Location:
    4q32
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (105960543..105966509)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (104402553..104408317)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (100208612..100215824)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene atonal bHLH transcription factor 8 Neighboring gene uncharacterized LOC120102308 Neighboring gene surfactant protein B Neighboring gene ubiquitin specific peptidase 39 Neighboring gene transmembrane protein 150A Neighboring gene ring finger protein 181 Neighboring gene vesicle-associated membrane protein 5

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    UPF0561 protein C2orf68 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419524.1 → NP_001406453.1  UPF0561 protein C2orf68 homolog

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A6IAA4, D3Z8R8
      Related
      ENSRNOP00000015807.2, ENSRNOT00000015807.5

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      105960543..105966509
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039108708.2 → XP_038964636.1  UPF0561 protein C2orf68 homolog isoform X2

      Conserved Domains (1) summary
      pfam10573
      Location:4 → 92
      UPF0561; Uncharacterized protein family UPF0561

    2. XM_006236685.5 → XP_006236747.1  UPF0561 protein C2orf68 homolog isoform X1

      See identical proteins and their annotated locations for XP_006236747.1

      UniProtKB/TrEMBL
      A0A8I6AJH9
      Related
      ENSRNOP00000095364.1
      Conserved Domains (1) summary
      pfam10573
      Location:4 → 126
      UPF0561; uncharacterized protein family UPF0561
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials