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    CG13698 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 40000, updated on 10-May-2024

    Summary

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    Official Symbol
    CG13698provided by FlyBase
    Primary source
    FLYBASE:FBgn0036773
    Locus tag
    Dmel_CG13698
    See related
    AllianceGenome:FB:FBgn0036773
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG13698
    Summary
    Is expressed in several structures, including adult head; embryonic optic lobe primordium; embryonic/larval salivary gland body; presumptive embryonic/larval system; and wing disc. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See CG13698 in Genome Data Viewer
    Location:
    75B7-75B9; 3-45 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (18088417..18106149, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (18081517..18099249, complement)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR43253 Neighboring gene long non-coding RNA:CR32194 Neighboring gene uncharacterized protein Neighboring gene mitochondrial ribosomal protein S26 Neighboring gene RNA polymerase III subunit D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Regulation of chromatin organization and inducible gene expression by a Drosophila insulator. Wood AM, et al. Mol Cell, 2011 Oct 7. PMID 21981916, Free PMC Article
    2. Genetic annotation of gain-of-function screens using RNA interference and in situ hybridization of candidate genes in the Drosophila wing. Molnar C, et al. Genetics, 2012 Oct. PMID 22798488, Free PMC Article
    3. Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization. Menoret D, et al. Genome Biol, 2013 Aug 23. PMID 23972280, Free PMC Article
    4. Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome. MacMillan HA, et al. Sci Rep, 2016 Jun 30. PMID 27357258, Free PMC Article
    5. The genetic basis for variation in olfactory behavior in Drosophila melanogaster. Arya GH, et al. Chem Senses, 2015 May. PMID 25687947, Free PMC Article

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG13698-PB
    CG13698-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      18088417..18106149 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_140770.3 → NP_649027.1  uncharacterized protein Dmel_CG13698, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_649027.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VVN1
      Related
      FBpp0074903

    2. NM_001275076.1 → NP_001262005.1  uncharacterized protein Dmel_CG13698, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262005.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VVN1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VVN1 Q9VVN1

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