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    CG11560 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 39376, updated on 10-May-2024

    Summary

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    Official Symbol
    CG11560provided by FlyBase
    Primary source
    FLYBASE:FBgn0036249
    Locus tag
    Dmel_CG11560
    See related
    AllianceGenome:FB:FBgn0036249
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG11560
    Summary
    Predicted to enable DNA binding activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in nuclear body. Is expressed in central brain primordium; embryonic brain; larval ventral nerve cord; organism; and ventral nerve cord primordium. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See CG11560 in Genome Data Viewer
    Location:
    68F4-68F4; 3-38 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (12120019..12121185)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (12113119..12114285)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene versatile Neighboring gene sunspot Neighboring gene ypsilon schachtel Neighboring gene Ionotropic receptor 68b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The BED finger, a novel DNA-binding domain in chromatin-boundary-element-binding proteins and transposases. Aravind L. Trends Biochem Sci, 2000 Sep. PMID 10973053
    2. Muscleblind, BSF and TBPH are mislocalized in the muscle sarcomere of a Drosophila myotonic dystrophy model. Llamusi B, et al. Dis Model Mech, 2013 Jan. PMID 23118342, Free PMC Article
    3. Genomics of Recombination Rate Variation in Temperature-Evolved Drosophila melanogaster Populations. Winbush A, et al. Genome Biol Evol, 2021 Jan 7. PMID 33247719, Free PMC Article
    4. mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster. Lepennetier G, et al. G3 (Bethesda), 2016 Jun 1. PMID 27172210, Free PMC Article
    5. Phylostratigraphic bias creates spurious patterns of genome evolution. Moyers BA, et al. Mol Biol Evol, 2015 Jan. PMID 25312911, Free PMC Article

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nuclear body IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG11560-PA
    CG11560-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      12120019..12121185
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001316463.1 → NP_001303392.1  uncharacterized protein Dmel_CG11560, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0S0WNE9, B6IDV8
      Conserved Domains (1) summary
      smart00614
      Location:48 → 93
      ZnF_BED; BED zinc finger

    2. NM_140290.3 → NP_648547.3  uncharacterized protein Dmel_CG11560, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_648547.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      B6IDV8, Q9VTT4
      Related
      FBpp0075725
      Conserved Domains (1) summary
      smart00614
      Location:48 → 93
      ZnF_BED; BED zinc finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0S0WNE9 A0A0S0WNE9
    Q8T004 Q8T004
    Q9VTT4 Q9VTT4

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