U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CG12213 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 41447, updated on 10-May-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CG12213provided by FlyBase
    Primary source
    FLYBASE:FBgn0260742
    Locus tag
    Dmel_CG12213
    See related
    AllianceGenome:FB:FBgn0260742
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    87A7-9/3; anon-87Ab; Dmel\CG12213
    Summary
    Is expressed in adult head. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CG12213 in Genome Data Viewer
    Location:
    87A3-87A3; 3-51 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (11964674..11967691, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (7790396..7793413, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Heat shock protein 70 Aa Neighboring gene Heat shock protein 70 Ab Neighboring gene uncharacterized protein Neighboring gene aurora A Neighboring gene Glutamate Carrier 1 Neighboring gene Transport and Golgi organization 9 Neighboring gene Glutamate Carrier 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Remarkable site specificity of local transposition into the Hsp70 promoter of Drosophila melanogaster. Shilova VY, et al. Genetics, 2006 Jun. PMID 16582443, Free PMC Article
    2. Mutations in aurora prevent centrosome separation leading to the formation of monopolar spindles. Glover DM, et al. Cell, 1995 Apr 7. PMID 7720077
    3. Identification of JAK/STAT signalling components by genome-wide RNA interference. Müller P, et al. Nature, 2005 Aug 11. PMID 16094372
    4. Genome-wide mapping of boundary element-associated factor (BEAF) binding sites in Drosophila melanogaster links BEAF to transcription. Jiang N, et al. Mol Cell Biol, 2009 Jul. PMID 19380483, Free PMC Article
    5. Mobile-phone radiation-induced perturbation of gene-expression profiling, redox equilibrium and sporadic-apoptosis control in the ovary of Drosophila melanogaster. Manta AK, et al. Fly (Austin), 2017 Apr 3. PMID 27960592, Free PMC Article

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    Names
    CG12213-PB
    CG12213-PC
    CG12213-PD
    CG12213-PE
    anon-87Ab

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      11964674..11967691 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001275560.1 → NP_001262489.1  uncharacterized protein Dmel_CG12213, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262489.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B8A412, Q8INJ4
      Conserved Domains (2) summary
      PTZ00108
      Location:146 → 367
      PTZ00108; DNA topoisomerase 2-like protein; Provisional
      pfam15921
      Location:33 → 213
      CCDC158; Coiled-coil domain-containing protein 158

    2. NM_169442.3 → NP_731654.2  uncharacterized protein Dmel_CG12213, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_731654.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      B8A412, Q9VGF8
      Conserved Domains (2) summary
      PTZ00108
      Location:146 → 378
      PTZ00108; DNA topoisomerase 2-like protein; Provisional
      pfam15921
      Location:33 → 213
      CCDC158; Coiled-coil domain-containing protein 158

    3. NM_001104284.2 → NP_001097754.1  uncharacterized protein Dmel_CG12213, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001097754.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8JQY2, B8A412
      Conserved Domains (1) summary
      pfam15921
      Location:33 → 213
      CCDC158; Coiled-coil domain-containing protein 158

    4. NM_141876.4 → NP_650133.2  uncharacterized protein Dmel_CG12213, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_650133.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      B8A412, Q8INJ4
      Conserved Domains (2) summary
      PTZ00108
      Location:146 → 367
      PTZ00108; DNA topoisomerase 2-like protein; Provisional
      pfam15921
      Location:33 → 213
      CCDC158; Coiled-coil domain-containing protein 158
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A8JQY2 A8JQY2
    Q8INJ4 Q8INJ4
    Q9VGF8 Q9VGF8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools