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    CG9018 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 38283, updated on 10-May-2024

    Summary

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    Official Symbol
    CG9018provided by FlyBase
    Primary source
    FLYBASE:FBgn0035318
    Locus tag
    Dmel_CG9018
    See related
    AllianceGenome:FB:FBgn0035318
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG9018; FBgn0035318
    Summary
    Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in mRNA 3'-end processing. Predicted to be part of RNA polymerase II, holoenzyme. Is expressed in adult head and organism. Orthologous to human RPRD1A (regulation of nuclear pre-mRNA domain containing 1A) and RPRD1B (regulation of nuclear pre-mRNA domain containing 1B). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See CG9018 in Genome Data Viewer
    Location:
    62D3-62D3; 3-2 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (2235284..2237076, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (2235284..2237076, complement)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Outer segment 2 Neighboring gene Adenylyl cyclase X D Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Competition within Introns: Splicing Wins over Polyadenylation via a General Mechanism. Tikhonov M, et al. Acta Naturae, 2013 Oct. PMID 24455183, Free PMC Article
    2. EAST Organizes Drosophila Insulator Proteins in the Interchromosomal Nuclear Compartment and Modulates CP190 Binding to Chromatin. Golovnin A, et al. PLoS One, 2015. PMID 26489095, Free PMC Article
    3. Transcription factor networks in Drosophila melanogaster. Rhee DY, et al. Cell Rep, 2014 Sep 25. PMID 25242320, Free PMC Article
    4. Drosophila muller f elements maintain a distinct set of genomic properties over 40 million years of evolution. Leung W, et al. G3 (Bethesda), 2015 Mar 4. PMID 25740935, Free PMC Article
    5. Hedgehog Signaling Strength Is Orchestrated by the mir-310 Cluster of MicroRNAs in Response to Diet. Çiçek IÖ, et al. Genetics, 2016 Mar. PMID 26801178, Free PMC Article

    See all (28) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables RNA polymerase II complex binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA 3'-end processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG9018-PA
    CG9018-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      2235284..2237076 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_139444.2 → NP_647701.1  uncharacterized protein Dmel_CG9018, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_647701.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W039
      Related
      FBpp0072788
      Conserved Domains (2) summary
      smart00582
      Location:8 → 131
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      pfam16566
      Location:229 → 371
      CREPT; Cell-cycle alteration and expression-elevated protein in tumour

    2. NM_167938.2 → NP_728723.1  uncharacterized protein Dmel_CG9018, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_728723.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SX50
      Related
      FBpp0072787
      Conserved Domains (2) summary
      smart00582
      Location:8 → 131
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      pfam16566
      Location:229 → 325
      CREPT; Cell-cycle alteration and expression-elevated protein in tumour
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8SX50 Q8SX50
    Q9W039 Q9W039

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