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    Rhox9 reproductive homeobox 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 298352, updated on 29-Feb-2024

    Summary

    Official Symbol
    Rhox9provided by RGD
    Official Full Name
    reproductive homeobox 9provided by RGD
    Primary source
    RGD:1563844
    See related
    Ensembl:ENSRNOG00000050457
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Psx4
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See Rhox9 in Genome Data Viewer
    Location:
    Xq35
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (121507522..121510373, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (116641863..116644714, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) Unplaced Scaffold NW_007906942.1 (9496..10900, complement)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene intraflagellar transport 52, pseudogene 1 Neighboring gene Rhox homeobox family member 7 Neighboring gene ORMDL sphingolipid biosynthesis regulator 1, pseudogene 4 Neighboring gene cardiolipin synthase 1, pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    reproductive homeobox 9
    Names
    Rhox homeobox family member 9
    homeobox protein PSX4
    reproductive homeobox on X chromosome, 9

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024874.1NP_001020045.1  reproductive homeobox 9

      See identical proteins and their annotated locations for NP_001020045.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ058656
      UniProtKB/TrEMBL
      A0A9K3Y756, M0R9K0, Q4TU74
      Related
      ENSRNOP00000066170.2, ENSRNOT00000072249.4
      Conserved Domains (1) summary
      pfam00046
      Location:154207
      Homeobox; Homeobox domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      121507522..121510373 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)