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    elfA putative laminin-binding fimbrial subunit [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948306, updated on 7-Dec-2023

    Summary

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    Gene symbol
    elfA
    Gene description
    putative laminin-binding fimbrial subunit
    Primary source
    ASAP:ABE-0003185
    Locus tag
    b0938
    See related
    ECOCYC:G6480
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0929; ycbQ
    Summary
    One of 25 FimA homologs in EcoGene. [More information is available at EcoGene: EG13709]. YcbQ was found, in random transposon mutagenesis studies, to be required for growth in optimum (rich medium at 37 degrees C) growth conditions but not under cold conditions (15 degrees C) or in minimal medium . [More information is available at EcoCyc: G6480].
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    Genomic context

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    Sequence:
    NC_000913.3 (997868..998407)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene FMNH2-dependent alkanesulfonate monooxygenase Neighboring gene aliphatic sulfonate ABC transporter periplasmic binding protein Neighboring gene NADPH-dependent FMN reductase Neighboring gene putative fimbrial chaperone ElfD Neighboring gene putative fimbrial usher protein ElfC Neighboring gene putative fimbrial-like adhesin protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Escherichia coli ycbQRST operon encodes fimbriae with laminin-binding and epithelial cell adherence properties in Shiga-toxigenic E.  coli O157:H7. Samadder P, et al. Environ Microbiol, 2009 Jul. PMID 19508558, Free PMC Article
    2. Escherichia coli K-12 possesses multiple cryptic but functional chaperone-usher fimbriae with distinct surface specificities. Korea CG, et al. Environ Microbiol, 2010 Jul. PMID 20345943
    3. Scanning the Escherichia coli chromosome by random transposon mutagenesis and multiple phenotypic screening. Serina S, et al. Res Microbiol, 2004 Oct. PMID 15380559
    4. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in cell adhesion involved in single-species biofilm formation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within cell adhesion involved in single-species biofilm formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in pilus organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in pilus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in pilus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in pilus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative laminin-binding fimbrial subunit

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      997868..998407
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415458.2 putative laminin-binding fimbrial subunit [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415458.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1X3JKI9
      Conserved Domains (1) summary
      cl01416
      Location:1 → 178
      Fimbrial; Fimbrial protein
    Nucleotide Protein
    Heading Accession and Version

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