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    ycbU putative fimbrial protein YcbU [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945561, updated on 23-Nov-2023

    Summary

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    Gene symbol
    ycbU
    Gene description
    putative fimbrial protein YcbU
    Primary source
    ASAP:ABE-0003193
    Locus tag
    b0942
    See related
    ECOCYC:G6484
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0933
    Summary
    One of 25 FimA homologs in EcoGene. [More information is available at EcoGene: EG13713].
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    Genomic context

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    Sequence:
    NC_000913.3 (1002889..1003431)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative fimbrial chaperone ElfD Neighboring gene putative fimbrial usher protein ElfC Neighboring gene putative fimbrial-like adhesin protein Neighboring gene putative fimbrial protein YcbV Neighboring gene putative fimbrial chaperone YcbF Neighboring gene dihydroorotate dehydrogenase, type 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Escherichia coli K-12 possesses multiple cryptic but functional chaperone-usher fimbriae with distinct surface specificities. Korea CG, et al. Environ Microbiol, 2010 Jul. PMID 20345943
    2. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in cell adhesion involved in single-species biofilm formation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within cell adhesion involved in single-species biofilm formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in pilus organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in pilus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in pilus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative fimbrial protein YcbU

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1002889..1003431
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415462.1 putative fimbrial protein YcbU [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415462.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2W6P7P3
      Conserved Domains (1) summary
      cl01416
      Location:30 → 180
      Fimbrial; Fimbrial protein
    Nucleotide Protein
    Heading Accession and Version

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