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    agaB galactosamine-specific PTS enzyme IIB component [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947653, updated on 2-May-2024

    Summary

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    Gene symbol
    agaB
    Gene description
    galactosamine-specific PTS enzyme IIB component
    Primary source
    ASAP:ABE-0010310
    Locus tag
    b3138
    See related
    ECOCYC:EG12769
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3126; yraD
    Summary
    AgaB is the Enzyme IIB domain of a predicted N-acetylgalactosamine-transporting PEP-dependent phosphotransferase system. [More information is available at EcoCyc: EG12769].
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    Genomic context

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    Sequence:
    NC_000913.3 (3284170..3284646)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative galactosamine-6-phosphate deaminase/isomerase Neighboring gene tagatose-1,6-bisphosphate aldolase 1 Neighboring gene galactosamine-specific PTS enzyme IIC component Neighboring gene galactosamine-specific PTS enzyme IID component Neighboring gene putative deaminase AgaI

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Application of AgaR repressor and dominant repressor variants for verification of a gene cluster involved in N-acetylgalactosamine metabolism in Escherichia coli K-12. Ray WK, et al. Mol Microbiol, 2004 Feb. PMID 14731281
    2. Temporal gene-expression in Escherichia coli K-12 biofilms. Domka J, et al. Environ Microbiol, 2007 Feb. PMID 17222132
    3. Novel phosphotransferase genes revealed by bacterial genome sequencing: a gene cluster encoding a putative N-acetylgalactosamine metabolic pathway in Escherichia coli. Reizer J, et al. Microbiology (Reading), 1996 Feb. PMID 8932697
    4. TCDB: the Transporter Classification Database for membrane transport protein analyses and information. Saier MH Jr, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381841, Free PMC Article
    5. Pathways for the utilization of N-acetyl-galactosamine and galactosamine in Escherichia coli. Brinkkötter A, et al. Mol Microbiol, 2000 Jul. PMID 10931310

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein-N(PI)-phosphohistidine-sugar phosphotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in phosphoenolpyruvate-dependent sugar phosphotransferase system IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    galactosamine-specific PTS enzyme IIB component

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3284170..3284646
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417607.1 galactosamine-specific PTS enzyme IIB component [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417607.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9APH5
      Conserved Domains (1) summary
      PRK09756
      Location:1 → 158
      PRK09756; PTS N-acetylgalactosamine transporter subunit IIB
    Nucleotide Protein
    Heading Accession and Version

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