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    agaD galactosamine-specific PTS enzyme IID component [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947649, updated on 2-May-2024

    Summary

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    Gene symbol
    agaD
    Gene description
    galactosamine-specific PTS enzyme IID component
    Primary source
    ASAP:ABE-0010314
    Locus tag
    b3140
    See related
    ECOCYC:G7635
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3128; yraF
    Summary
    AgaD is the Enzyme IID domain of a predicted N-acetylgalactosamine-transporting PEP-dependent phosphotransferase system. [More information is available at EcoCyc: G7635].
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    Genomic context

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    Sequence:
    NC_000913.3 (3285478..3286269)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene tagatose-1,6-bisphosphate aldolase 1 Neighboring gene galactosamine-specific PTS enzyme IIB component Neighboring gene galactosamine-specific PTS enzyme IIC component Neighboring gene putative deaminase AgaI Neighboring gene putative fimbrial protein YraH

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Application of AgaR repressor and dominant repressor variants for verification of a gene cluster involved in N-acetylgalactosamine metabolism in Escherichia coli K-12. Ray WK, et al. Mol Microbiol, 2004 Feb. PMID 14731281
    2. The genes and enzymes for the catabolism of galactitol, D-tagatose, and related carbohydrates in Klebsiella oxytoca M5a1 and other enteric bacteria display convergent evolution. Shakeri-Garakani A, et al. Mol Genet Genomics, 2004 Jul. PMID 15257457
    3. Novel phosphotransferase genes revealed by bacterial genome sequencing: a gene cluster encoding a putative N-acetylgalactosamine metabolic pathway in Escherichia coli. Reizer J, et al. Microbiology (Reading), 1996 Feb. PMID 8932697
    4. TCDB: the Transporter Classification Database for membrane transport protein analyses and information. Saier MH Jr, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381841, Free PMC Article
    5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in phosphoenolpyruvate-dependent sugar phosphotransferase system IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in phosphoenolpyruvate-dependent sugar phosphotransferase system IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    galactosamine-specific PTS enzyme IID component

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3285478..3286269
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417609.1 galactosamine-specific PTS enzyme IID component [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417609.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7L5V8U3, A0A827XNU0
      Conserved Domains (1) summary
      PRK09855
      Location:1 → 263
      PRK09855; PTS N-acetylgalactosamine transporter subunit IID
    Nucleotide Protein
    Heading Accession and Version

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