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    Tmem144 transmembrane protein 144 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361968, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Tmem144provided by RGD
    Official Full Name
    transmembrane protein 144provided by RGD
    Primary source
    RGD:1565845
    See related
    Ensembl:ENSRNOG00000010081 AllianceGenome:RGD:1565845
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565845
    Summary
    Predicted to enable carbohydrate transmembrane transporter activity. Predicted to be involved in carbohydrate transmembrane transport. Predicted to be integral component of membrane. Orthologous to human TMEM144 (transmembrane protein 144). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Kidney (RPKM 96.4), Liver (RPKM 32.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tmem144 in Genome Data Viewer
    Location:
    2q33
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (167258788..167291701, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (164960649..164993562, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (178585586..178617094, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene similar to human chromosome 4 open reading frame 46 Neighboring gene relaxin family peptide receptor 1 Neighboring gene uncharacterized LOC108350043 Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC102556854 Neighboring gene golgi associated kinase 1B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables carbohydrate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 144

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108551.1 → NP_001102021.1  transmembrane protein 144

      See identical proteins and their annotated locations for NP_001102021.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473976
      UniProtKB/TrEMBL
      A6J5S6, D3ZTK4
      Related
      ENSRNOP00000071705.1, ENSRNOT00000078610.2
      Conserved Domains (1) summary
      cl19288
      Location:9 → 347
      RhaT; L-rhamnose-proton symport protein (RhaT)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      167258788..167291701 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039102636.2 → XP_038958564.1  transmembrane protein 144 isoform X1

      UniProtKB/TrEMBL
      A6J5S6, D3ZTK4
      Conserved Domains (1) summary
      cl19288
      Location:9 → 347
      RhaT; L-rhamnose-proton symport protein (RhaT)

    2. XM_006232517.5 → XP_006232579.1  transmembrane protein 144 isoform X1

      See identical proteins and their annotated locations for XP_006232579.1

      UniProtKB/TrEMBL
      A6J5S6, D3ZTK4
      Conserved Domains (1) summary
      cl19288
      Location:9 → 347
      RhaT; L-rhamnose-proton symport protein (RhaT)

    3. XM_039102637.2 → XP_038958565.1  transmembrane protein 144 isoform X2

      Conserved Domains (1) summary
      cl19288
      Location:1 → 231
      RhaT; L-rhamnose-proton symport protein (RhaT)
    Nucleotide Protein Strain
    Heading Accession and Version

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