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    LOC4351723 translocase of chloroplast 90, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351723, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC4351723
    Gene description
    translocase of chloroplast 90, chloroplastic
    Locus tag
    OSNPB_120197400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 26.9), leaves before flowering (RPKM 25.7) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (5030762..5034475)

    Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene phosphoribosylamine--glycine ligase Neighboring gene uncharacterized LOC9267371 Neighboring gene protein SUPPRESSOR OF GENE SILENCING 3 homolog Neighboring gene protein SUPPRESSOR OF GENE SILENCING 3 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein targeting to chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    translocase of chloroplast 90, chloroplastic
    Names
    Os12g0197400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423357.1 → NP_001410286.1  translocase of chloroplast 90, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK241335, AP014968, CI085395
      UniProtKB/TrEMBL
      F4MGI8, Q0IPI7, Q2QWF0

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

      Range
      5030762..5034475
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764917.2 → XP_015620403.1  translocase of chloroplast 90, chloroplastic

      UniProtKB/TrEMBL
      Q0IPI7
      Conserved Domains (1) summary
      TIGR00993
      Location:20 → 760
      3a0901s04IAP86; chloroplast protein import component Toc86/159, G and M domains
    Nucleotide Protein
    Heading Accession and Version

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