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    LOC4341305 probable inositol oxygenase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341305, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4341305
    Gene description
    probable inositol oxygenase
    Locus tag
    OSNPB_060561000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0456F09.5
    Expression
    Biased expression in roots before flowering (RPKM 99.0), flowers (RPKM 21.3) and 3 other tissues See more
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (21478413..21482449)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene deSI-like protein At4g17486 Neighboring gene GDSL esterase/lipase At1g71250 Neighboring gene serine carboxypeptidase-like 50 Neighboring gene K(+) efflux antiporter 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. OsMIOX, a myo-inositol oxygenase gene, improves drought tolerance through scavenging of reactive oxygen species in rice (Oryza sativa L.). Duan J, et al. Plant Sci, 2012 Nov. PMID 23017909
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data suggest that OsMIOX (Myo-inositol oxygenase; AK103977; NM_001064406 ) has a specific function in drought stress tolerance by decreasing oxidative damage.
      Title: OsMIOX, a myo-inositol oxygenase gene, improves drought tolerance through scavenging of reactive oxygen species in rice (Oryza sativa L.).
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables inositol oxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in inositol catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable inositol oxygenase
    Names
    LOC_Os06g36560
    MI oxygenase
    P0528E12.30
    myo-inositol oxygenase
    putative myo-inositol oxygenase
    XP_015643978.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421622.1 → NP_001408551.1  probable inositol oxygenase

      Status: VALIDATED

      Source sequence(s)
      CB653644, CB657114, CI067928, CI071946, CI310154
      UniProtKB/Swiss-Prot
      Q5Z8T3
      UniProtKB/TrEMBL
      A2YE34, B7EFI5, Q0DBI8

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      21478413..21482449
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788492.1 → XP_015643978.1  probable inositol oxygenase

      UniProtKB/Swiss-Prot
      Q5Z8T3
      UniProtKB/TrEMBL
      Q0DBI8
      Conserved Domains (1) summary
      pfam05153
      Location:58 → 308
      MIOX; Myo-inositol oxygenase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5Z8T3.1 GenPept UniProtKB/Swiss-Prot:Q5Z8T3

    Gene LinkOut

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    Research Materials