LOC4351580 nucleolar complex protein 2 homolog [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4351580
Gene description: nucleolar complex protein 2 homolog
Locus tag: OSNPB_120163200
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression: Ubiquitous expression in flower buds (RPKM 14.6), leaves before flowering (RPKM 10.8) and 6 other tissues See more
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Genomic context

Location:: chromosome: 12

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	12	NC_029267.1 (3201632..3207826)

Chromosome 12 - NC_029267.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:: NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Process	Evidence Code	Pubs
involved_in ribosomal large subunit biogenesis	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of Noc1p-Noc2p complex	IEA Inferred from Electronic Annotation more info	PubMed
part_of Noc2p-Noc3p complex	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleolus	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleoplasm	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: nucleolar complex protein 2 homolog

Names: Os12g0163200

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001423334.1 → NP_001410263.1 nucleolar complex protein 2 homolog

Status: VALIDATED

Source sequence(s)

AK070504, AU055701

UniProtKB/TrEMBL

B9GC09, Q0IPW8, Q2QXB4

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029267.1 Reference IRGSP-1.0 Primary Assembly

Range

3201632..3207826

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015762580.2 → XP_015618066.1 nucleolar complex protein 2 homolog

UniProtKB/TrEMBL

Q2QXB4

Conserved Domains (1) summary

pfam03715
Location:368 → 662

Noc2; Noc2p family