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    LOC4347185 O-fucosyltransferase 35 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347185, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4347185
    Gene description
    O-fucosyltransferase 35
    Locus tag
    OSNPB_090442900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 46.0), leaves before flowering (RPKM 32.5) and 6 other tissues See more
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    Genomic context

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    See LOC4347185 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (16476937..16481747)

    Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent DNA helicase DDM1 Neighboring gene uncharacterized LOC4347184 Neighboring gene gibberellin 3-beta-dioxygenase 2-2-like Neighboring gene F-box/FBD/LRR-repeat protein At1g13570-like Neighboring gene F-box/FBD/LRR-repeat protein At5g53840-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    O-fucosyltransferase 35
    Names
    Os09g0442900
    P0046G12.29
    putative auxin-independent growth promoter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

      Range
      16476937..16481747
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757157.2 → XP_015612643.1  O-fucosyltransferase 35

      UniProtKB/TrEMBL
      B8BCF9, B9G3V6, Q67UT6
      Conserved Domains (1) summary
      cd11299
      Location:244 → 565
      O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
    Nucleotide Protein
    Heading Accession and Version

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