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    LOC4334349 peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334349, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC4334349
    Gene description
    peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like
    Locus tag
    OSNPB_030786000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GOX; GLO1; OsGLO1; OsJ_12861
    Expression
    Broad expression in leaves before flowering (RPKM 566.8), roots after flowering (RPKM 370.1) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (32624619..32632434)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene transcription factor PCF6-like Neighboring gene probable glutathione S-transferase GSTU1 Neighboring gene zinc finger protein GIS3 Neighboring gene DNA-binding protein HEXBP

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FMN binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycolate oxidase 1; peroxisomal (S)-2-hydroxy-acid oxidase GLO1
    Names
    GOX 1
    Glycolate oxidase 1
    LOC_Os03g57220
    Os03g0786000
    Short chain alpha-hydroxy acid oxidase GLO1
    XP_025879724.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402281.1 → NP_001389210.1  glycolate oxidase 1

      Status: VALIDATED

      Source sequence(s)
      AK098878, CB651000, CF326256
      UniProtKB/Swiss-Prot
      A0A0P0W4I1, B8AKX6, Q10CE4

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      32624619..32632434
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026023939.1 → XP_025879724.1  peroxisomal (S)-2-hydroxy-acid oxidase GLO1

      Conserved Domains (1) summary
      cl27607
      Location:342 → 708
      FMN_dh; FMN-dependent dehydrogenase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10CE4.1 GenPept UniProtKB/Swiss-Prot:Q10CE4

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