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    LOC4344029 H/ACA ribonucleoprotein complex subunit 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344029, updated on 11-Apr-2024

    Summary

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    Gene symbol
    LOC4344029
    Gene description
    H/ACA ribonucleoprotein complex subunit 4
    Locus tag
    OSNPB_070636000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1136_D11.103
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    Genomic context

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    See LOC4344029 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (26406711..26408802, complement)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 709B2 Neighboring gene hydrophobic protein LTI6A-like Neighboring gene probable transcription factor At5g28040 Neighboring gene SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pseudouridine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in box H/ACA sno(s)RNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in snRNA pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box H/ACA snoRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    H/ACA ribonucleoprotein complex subunit 4
    Names
    Os07g0636000
    putative centromere/microtubule binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      26406711..26408802 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792070.2 → XP_015647556.1  H/ACA ribonucleoprotein complex subunit 4

      UniProtKB/TrEMBL
      A0A0N7KNX3, A2YP23, A3BMK8, Q8H5T5
      Conserved Domains (1) summary
      TIGR00425
      Location:70 → 395
      CBF5; rRNA pseudouridine synthase, putative
    Nucleotide Protein
    Heading Accession and Version

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