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    LOC4331875 protein EMBRYO DEFECTIVE 514 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331875, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4331875
    Gene description
    protein EMBRYO DEFECTIVE 514
    Locus tag
    OSNPB_030187000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 52.9), flowers (RPKM 33.0) and 6 other tissues See more
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    Genomic context

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    See LOC4331875 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4545276..4547960)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein-sorting-associated protein 37 homolog 1 Neighboring gene aspartyl protease 25-like Neighboring gene protein CutA 1, chloroplastic-like Neighboring gene dentin sialophosphoprotein-like Neighboring gene WD and tetratricopeptide repeats protein 1-like Neighboring gene uncharacterized LOC112938317

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in chloroplast organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chloroplast rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein EMBRYO DEFECTIVE 514
    Names
    Os03g0187000
    protein DCL, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417292.1 → NP_001404221.1  protein EMBRYO DEFECTIVE 514

      Status: VALIDATED

      Source sequence(s)
      AK059827, CI295601, CI735491
      UniProtKB/TrEMBL
      A0A8J8XSZ3, B8APQ5, B9F5K7, Q0DUG8, Q10QR1

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      4545276..4547960
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776849.2 → XP_015632335.1  protein EMBRYO DEFECTIVE 514

      UniProtKB/TrEMBL
      Q10QR1
      Conserved Domains (1) summary
      pfam11523
      Location:107 → 179
      DUF3223; Protein of unknown function (DUF3223)
    Nucleotide Protein
    Heading Accession and Version

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