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    LOC4347240 nuclear pore complex protein NUP58 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347240, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4347240
    Gene description
    nuclear pore complex protein NUP58
    Locus tag
    OSNPB_090453500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 32.0), roots after flowering (RPKM 25.6) and 6 other tissues See more
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    Genomic context

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    See LOC4347240 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (17008755..17014378, complement)

    Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene transmembrane emp24 domain-containing protein p24delta4 Neighboring gene annexin D8 Neighboring gene thylakoidal processing peptidase 1, chloroplastic Neighboring gene dipeptidyl aminopeptidase BI Neighboring gene probable N-succinyldiaminopimelate aminotransferase DapC

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis TRANSCURVATA1 encodes NUP58, a component of the nucleopore central channel. Ferrández-Ayela A, et al. PLoS One, 2013. PMID 23840761, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear localization sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleocytoplasmic transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear pore complex protein NUP58
    Names
    Os09g0453500
    P0488D02.24
    putative nucleoporin p58; nucleoporin p45

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

      Range
      17008755..17014378 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795722.2 → XP_015651208.1  nuclear pore complex protein NUP58

      UniProtKB/TrEMBL
      A0A0P0XMK8, B8BCJ8, Q0J1A6, Q67UZ2
      Conserved Domains (1) summary
      pfam15967
      Location:214 → 467
      Nucleoporin_FG2; Nucleoporin FG repeated region
    Nucleotide Protein
    Heading Accession and Version

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