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    LOC4331102 cinnamoyl-CoA reductase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331102, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4331102
    Gene description
    cinnamoyl-CoA reductase 1-like
    Locus tag
    OSNPB_020811800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 1.3), milk grains (RPKM 0.3) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (34764335..34766566)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene cinnamoyl-CoA reductase 1-like Neighboring gene U2 spliceosomal RNA Neighboring gene cinnamoyl-CoA reductase 1-like Neighboring gene translation initiation factor eIF-2B subunit epsilon

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lignin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cinnamoyl-CoA reductase 1-like
    Names
    OSJNBa0053L11.3
    Os02g0811600
    Os02g0811800
    P0016F11.22
    P0016F11.25
    putative cinnamoyl CoA reductase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      34764335..34766566
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767937.2 → XP_015623423.1  cinnamoyl-CoA reductase 1-like

      UniProtKB/TrEMBL
      Q0DWJ8, Q6K3G2, Q6K5W0
      Conserved Domains (1) summary
      cd08958
      Location:22 → 305
      FR_SDR_e; flavonoid reductase (FR), extended (e) SDRs
    Nucleotide Protein
    Heading Accession and Version

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