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    LOC4343450 probable pyruvate, phosphate dikinase regulatory protein, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343450, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4343450
    Gene description
    probable pyruvate, phosphate dikinase regulatory protein, chloroplastic
    Locus tag
    OSNPB_070530600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    BFRP; PDRP1; OsJ_023576
    Expression
    Broad expression in roots before flowering (RPKM 110.1), mature seeds (RPKM 51.3) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (20764504..20774704)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene oral cancer-overexpressed protein 1 homolog Neighboring gene uncharacterized LOC4343449 Neighboring gene uncharacterized LOC4343451 Neighboring gene uncharacterized LOC112939584 Neighboring gene peroxidase 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphotransferase activity, phosphate group as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable pyruvate, phosphate dikinase regulatory protein, chloroplastic
    Names
    Bifunctional dikinase regulatory protein
    LOC_Os07g34640
    P0681F05.120
    PPDK RP
    PPDK regulatory protein
    Pyruvate, Pi dikinase regulatory protein
    putative ATP/GTP-binding protein
    XP_015647172.1
    XP_015647173.1
    XP_015647174.1
    XP_025882661.1
    XP_025882662.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422180.1 → NP_001409109.1  probable pyruvate, phosphate dikinase regulatory protein, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK120747
      UniProtKB/Swiss-Prot
      A2YM35, A3BKK4, B7F6A4, Q0D5W1, Q8GVP6

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      20764504..20774704
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791686.2 → XP_015647172.1  probable pyruvate, phosphate dikinase regulatory protein, chloroplastic isoform X1

      Conserved Domains (1) summary
      pfam03618
      Location:158 → 424
      Kinase-PPPase; Kinase/pyrophosphorylase

    2. XM_026026876.1 → XP_025882661.1  probable pyruvate, phosphate dikinase regulatory protein, chloroplastic isoform X2

      Conserved Domains (2) summary
      pfam03618
      Location:158 → 424
      Kinase-PPPase; Kinase/pyrophosphorylase
      cl26464
      Location:37 → 124
      Atrophin-1; Atrophin-1 family

    3. XM_015791687.2 → XP_015647173.1  probable pyruvate, phosphate dikinase regulatory protein, chloroplastic isoform X3

      Conserved Domains (1) summary
      pfam03618
      Location:158 → 424
      Kinase-PPPase; Kinase/pyrophosphorylase

    4. XM_015791688.2 → XP_015647174.1  probable pyruvate, phosphate dikinase regulatory protein, chloroplastic isoform X4

      UniProtKB/Swiss-Prot
      Q8GVP6
      Conserved Domains (1) summary
      pfam03618
      Location:158 → 424
      Kinase-PPPase; Kinase/pyrophosphorylase

    5. XM_026026877.1 → XP_025882662.1  probable pyruvate, phosphate dikinase regulatory protein, chloroplastic isoform X5

      Conserved Domains (2) summary
      pfam03618
      Location:158 → 424
      Kinase-PPPase; Kinase/pyrophosphorylase
      cl26464
      Location:37 → 124
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GVP6.2 GenPept UniProtKB/Swiss-Prot:Q8GVP6

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