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    LOC4328574 alpha/beta hydrolase domain-containing protein 17C [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328574, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4328574
    Gene description
    alpha/beta hydrolase domain-containing protein 17C
    Locus tag
    OSNPB_020190800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 15.7), roots before flowering (RPKM 15.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (5038364..5043343, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene lycopene beta cyclase, chloroplastic Neighboring gene uncharacterized LOC4328573 Neighboring gene biogenesis of lysosome-related organelles complex 1 subunit 2 Neighboring gene disease resistance protein RPM1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    alpha/beta hydrolase domain-containing protein 17C; uncharacterized protein LOC4328574
    Names
    OSJNBb0031B09.25
    Os02g0190800
    putative Cgi67 serine protease

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      5038364..5043343 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771731.2 → XP_015627217.1  alpha/beta hydrolase domain-containing protein 17C isoform X1

      UniProtKB/TrEMBL
      B8AJ95, B9F3S9, Q0E371, Q6YUU0
      Conserved Domains (1) summary
      COG1073
      Location:87 → 276
      FrsA; Fermentation-respiration switch protein FrsA, has esterase activity, DUF1100 family [Signal transduction mechanisms]

    2. XM_026023269.1 → XP_025879054.1  alpha/beta hydrolase domain-containing protein 17C isoform X1

      UniProtKB/TrEMBL
      B8AJ95, B9F3S9, Q0E371, Q6YUU0
      Conserved Domains (1) summary
      COG1073
      Location:87 → 276
      FrsA; Fermentation-respiration switch protein FrsA, has esterase activity, DUF1100 family [Signal transduction mechanisms]

    3. XM_015771733.2 → XP_015627219.1  uncharacterized protein LOC4328574 isoform X2

      Conserved Domains (1) summary
      COG1506
      Location:77 → 190
      DAP2; Dipeptidyl aminopeptidase/acylaminoacyl peptidase [Amino acid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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